It's a broken system.
There is really no right way to choose the Pro Bowl. The fans don't get it right unless it's a QB, WR, or RB. The players vote like it's a high school election.
The sad part is when a player's career is over the Hall of Fame voters use the Pro Bowl to judge how good a person is, but most of the time the Pro Bowl is dead wrong.
Here's a thought, have a committee of writers, ex-players, and ex-coaches pick the Pro Bowl like they do the Hall of Fame.